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/*
* Copyright (C) 2010-2012 Regents of the University of Michigan,
* Hyun Min Kang, Matthew Flickenger, Matthew Snyder,
* and Goncalo Abecasis
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with this program. If not, see <http://www.gnu.org/licenses/>.
*/
#include "VcfFileWriter.h"
VcfFileWriter::VcfFileWriter()
: VcfFile()
{
}
VcfFileWriter::~VcfFileWriter()
{
}
bool VcfFileWriter::open(const char* filename, VcfHeader& header,
InputFile::ifileCompression compressionMode)
{
myStatus = StatGenStatus::SUCCESS;
if(VcfFile::open(filename, "w", compressionMode))
{
// Successfully opened, so write the header.
if(!header.write(myFilePtr))
{
// Failed, so copy the status.
myStatus = header.getStatus();
return(false);
}
}
else
{
// Failed, status set by VcfFile::open.
return(false);
}
// Successfully opened and read the header.
return(true);
}
bool VcfFileWriter::open(const char* filename, VcfHeader& header)
{
return(open(filename, header, InputFile::BGZF));
}
bool VcfFileWriter::writeRecord(VcfRecord& record)
{
if(!record.write(myFilePtr, mySiteOnly))
{
myStatus = record.getStatus();
return(false);
}
++myNumRecords;
return(true);
}
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