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Source: libtfbs-perl
Section: perl
Priority: optional
Build-Depends: debhelper (>= 8), perl, pdl, bioperl, libwww-perl, libdbi-perl
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
DM-Upload-Allowed: yes
Uploaders: Steffen Moeller <moeller@debian.org>, Charles Plessy <plessy@debian.org>
Standards-Version: 3.9.2
Homepage: http://tfbs.genereg.net
Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/libtfbs-perl/
Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/libtfbs-perl/trunk/
Package: libtfbs-perl
Architecture: any
Depends: ${perl:Depends}, ${shlibs:Depends}, ${misc:Depends}, pdl, bioperl, libwww-perl, libdbi-perl
Recommends: libgd-gd2-perl | libgd-gd2-noxpm-perl
Description: scanning DNA sequence with a position weight matrix
The TFBS perl modules comprise a set of routines to interact with the
Transfac and Jaspar databases that describe a special family of proteins,
the transcription factors. These bind to genomic DNA to initiate (or
prevent) the readout of a gene. Once multiple binding sites are known
for a transcription factor, these are gathered in a single file and are
aligned in order to find position-specific characteristica that might
be used to predict such binding events in novel DNA sequences.
.
If you use TFBS in your work, please cite "Lenhard B., Wasserman W.W. (2002)
TFBS: Computational framework for transcription factor binding site analysis.
Bioinformatics 18:1135-1136".
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