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Changes
MANIFEST
Makefile.PL
README
BUGS
TFBS/DB.pm
TFBS/_Iterator.pm
TFBS/Matrix.pm
TFBS/MatrixSet.pm
TFBS/PatternGenI.pm
TFBS/PatternI.pm
TFBS/SitePair.pm
TFBS/SitePairSet.pm
TFBS/Site.pm
TFBS/SiteSet.pm
TFBS/_Iterator/_SiteSetIterator.pm
TFBS/_Iterator/_MatrixSetIterator.pm
TFBS/Matrix/_Alignment.pm
TFBS/Matrix/ICM.pm
TFBS/Matrix/PFM.pm
TFBS/Matrix/PWM.pm
TFBS/Word.pm
TFBS/Word/Consensus.pm
TFBS/DB/FlatFileDir.pm
TFBS/DB/JASPAR2.pm
TFBS/DB/JASPAR4.pm
TFBS/DB/TRANSFAC.pm
TFBS/DB/LocalTRANSFAC.pm
TFBS/PatternGen.pm
TFBS/PatternGen/Gibbs.pm
TFBS/PatternGen/SimplePFM.pm
TFBS/PatternGen/Motif/Matrix.pm
TFBS/PatternGen/Motif/Word.pm
TFBS/PatternGen/Gibbs/Motif.pm
TFBS/PatternGen/AnnSpec.pm
TFBS/PatternGen/Elph.pm
TFBS/PatternGen/YMF.pm
TFBS/PatternGen/MEME.pm
TFBS/PatternGen/MEME/Motif.pm
TFBS/PatternGen/Elph/Motif.pm
TFBS/PatternGen/YMF/Motif.pm
TFBS/PatternGen/AnnSpec/Motif.pm
TFBS/PatternGen/Motif/Word.pm
TFBS/PatternGen/Motif/Matrix.pm
TFBS/Tools/SetOperations.pm
Ext/Makefile.PL
Ext/lib/pwm_search.h
Ext/lib/pwm_searchPFF.c
Ext/pwmsearch.pm
Ext/pwmsearch.xs
Ext/t/pwmsearch.t
Ext/t/test.fa
examples/script1.pl
examples/script2.pl
examples/sample_alignment.aln
examples/phylofoot.pl
examples/list_matrices.pl
examples/viewpfm.cgi
examples/SAMPLE_FlatFileDir/MA0001.pfm
examples/SAMPLE_FlatFileDir/MA0008.pfm
examples/SAMPLE_FlatFileDir/MA0015.pfm
examples/SAMPLE_FlatFileDir/MA0022.pfm
examples/SAMPLE_FlatFileDir/MA0029.pfm
examples/SAMPLE_FlatFileDir/MA0036.pfm
examples/SAMPLE_FlatFileDir/MA0043.pfm
examples/SAMPLE_FlatFileDir/MA0050.pfm
examples/SAMPLE_FlatFileDir/MA0057.pfm
examples/SAMPLE_FlatFileDir/MA0064.pfm
examples/SAMPLE_FlatFileDir/MA0071.pfm
examples/SAMPLE_FlatFileDir/MA0078.pfm
examples/SAMPLE_FlatFileDir/MA0085.pfm
examples/SAMPLE_FlatFileDir/MA0092.pfm
examples/SAMPLE_FlatFileDir/MA0099.pfm
examples/SAMPLE_FlatFileDir/MA0106.pfm
examples/SAMPLE_FlatFileDir/matrix_list.txt
t/01_Matrix.t
t/02_Search.t
t/03_DB_FlatFileDir.t
t/04_DB_TRANSFAC.t
t/05_DB_JASPAR.t
t/06_SimplePFM.t
t/07_Elph.t
t/07_MEME.t
t/07_AnnSpec.t
t/07_Gibbs.t
t/08_DB_LocalTRANSFAC.t
t/09_Word_Consensus.t
t/10_Tools_SetOperations.t
t/test.aln
t/test.fa
t/test_meme.fa
t/test.gibbin
t/transfac_old/matrix.dat
t/transfac_new/matrix.dat
META.yml Module meta-data (added by MakeMaker)
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