1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
|
#!/usr/bin/env perl -w
use TFBS::Matrix::PFM;
use TFBS::DB::FlatFileDir;
use Test;
plan(tests => 2);
my @dbparams;
# set up a matrix
my $matrixstring =
"12 3 0 0 4 0\n0 0 0 11 7 0\n0 9 12 0 0 0\n0 0 0 1 1 12";
my $pfm = TFBS::Matrix::PFM->new(-matrix=>$matrixstring, -ID=>"TEST001");
my $rawstring1 = $pfm->rawprint();
my $db;
# write/read test
$db = TFBS::DB::FlatFileDir->create ("t/FlatFileDir");
$db->store_Matrix($pfm);
my $pfm2= $db->get_Matrix_by_ID("TEST001", "PFM");
my $rawstring2 = $pfm2->rawprint;
ok ($rawstring1, $rawstring2);
# delete test
$db->delete_Matrix_having_ID('TEST001');
my $nopfm = $db->get_Matrix_by_ID("TEST001", "PFM");
ok(undef, $nopfm);
END {
-d "t/FlatFileDir" &&
unlink <t/FlatFileDir/*>;
rmdir "t/FlatFileDir";
}
|
