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#!/usr/bin/env perl -w
use TFBS::DB::TRANSFAC;
use Test;
plan(tests => 4);
my $db = TFBS::DB::TRANSFAC->new(-accept_conditions=>1);
# get a pfm by acc
my $pfm1 = $db->get_Matrix_by_acc('M00039');
my $icm1 = $db->get_Matrix_by_acc('M00039',"icm");
my $pfm2 = $db->get_Matrix_by_ID('V$CREB_01', "PFM");
my $icm2 = $db->get_Matrix_by_ID('V$CREB_01', "ICM");
print STDERR $icm1->name()."######".$icm1->tag('acc');
ok($pfm1->ID,'V$CREB_01');
ok($pfm1->rawprint, $pfm2->rawprint);
ok($icm1->rawprint, $icm2->rawprint);
ok($icm1->tag('acc'), "M00039");
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