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Description: Fix spelling errors.
hierachical -> hierarchical
occurence -> occurrence
Author: Bas Couwenberg <sebastic@debian.org>
--- a/TFBS/PatternGen/YMF.pm
+++ b/TFBS/PatternGen/YMF.pm
@@ -177,7 +177,7 @@
my $motif =TFBS::PatternGen::YMF::Motif->new
(-word=>$word,
-tags => {z_score=>$z_score,
- 'occurences'=>$occ,
+ 'occurrences'=>$occ,
'expectation value'=>$expect,
'variance'=>$var}
);
@@ -190,4 +190,4 @@
}
#
-1;
\ No newline at end of file
+1;
--- a/TFBS/MatrixSet.pm
+++ b/TFBS/MatrixSet.pm
@@ -763,7 +763,7 @@
Title : cluster
Usage : $matrixset->cluster(%args)
Function: Clusters the matrices in the set
- Returns : The root node of the hierachical clustering tree.
+ Returns : The root node of the hierarchical clustering tree.
An integer specifying the optimal number of clusters.
An array of TFBS::MatrixSets, one for each cluster.
Args : Many:
--- a/TFBS/Matrix/PFM.pm
+++ b/TFBS/Matrix/PFM.pm
@@ -366,7 +366,7 @@
# "pseudocounts" - standard pseudocount
# correction, more suitable for
# PFMs with large r column sums
- # If the parameter is ommited, small
+ # If the parameter is omitted, small
# sample correction is not applied
-draw_error_bars # if true, adds error bars to each position
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