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Source: libtfbs-perl
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Steffen Moeller <moeller@debian.org>,
Charles Plessy <plessy@debian.org>,
Andreas Tille <tille@debian.org>
Section: perl
Priority: optional
Build-Depends: debhelper-compat (= 12),
perl,
pdl (>= 1:2.016),
bioperl,
libwww-perl,
libdbi-perl
Standards-Version: 4.4.0
Vcs-Browser: https://salsa.debian.org/med-team/libtfbs-perl
Vcs-Git: https://salsa.debian.org/med-team/libtfbs-perl.git
Homepage: http://tfbs.genereg.net
Package: libtfbs-perl
Architecture: any
Depends: ${perl:Depends},
${pdl:Depends},
${shlibs:Depends},
${misc:Depends},
bioperl,
libwww-perl,
libdbi-perl
Recommends: libgd-gd2-perl | libgd-gd2-noxpm-perl
Description: scanning DNA sequence with a position weight matrix
The TFBS perl modules comprise a set of routines to interact with the
Transfac and Jaspar databases that describe a special family of proteins,
the transcription factors. These bind to genomic DNA to initiate (or
prevent) the readout of a gene. Once multiple binding sites are known
for a transcription factor, these are gathered in a single file and are
aligned in order to find position-specific characteristica that might
be used to predict such binding events in novel DNA sequences.
.
If you use TFBS in your work, please cite "Lenhard B., Wasserman W.W. (2002)
TFBS: Computational framework for transcription factor binding site analysis.
Bioinformatics 18:1135-1136".
.
Note: the TFBS perl module is no longer under active development. All the
functionality can be found in the TFBSTools Bioconductor package; users are
highly encouraged to switch. <http://bioconductor.org/packages/TFBSTools/>
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