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/*
* This file is part of the Vamsas Client version 0.2.
* Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite,
* Andrew Waterhouse and Dominik Lindner.
*
* Earlier versions have also been incorporated into Jalview version 2.4
* since 2008, and TOPALi version 2 since 2007.
*
* The Vamsas Client is free software: you can redistribute it and/or modify
* it under the terms of the GNU Lesser General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* The Vamsas Client is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU Lesser General Public License for more details.
*
* You should have received a copy of the GNU Lesser General Public License
* along with the Vamsas Client. If not, see <http://www.gnu.org/licenses/>.
*/
package uk.ac.vamsas.objects.core;
//---------------------------------/
//- Imported classes and packages -/
//---------------------------------/
import org.exolab.castor.xml.Marshaller;
import org.exolab.castor.xml.Unmarshaller;
/**
* Two sets of ranges defined between objects - usually sequences, indicating
* which regions on each are mapped.
*
* @version $Revision$ $Date$
*/
public class MapType extends uk.ac.vamsas.client.Vobject implements
java.io.Serializable {
// --------------------------/
// - Class/Member Variables -/
// --------------------------/
/**
*/
private uk.ac.vamsas.objects.core.Local _local;
/**
*/
private uk.ac.vamsas.objects.core.Mapped _mapped;
// ----------------/
// - Constructors -/
// ----------------/
public MapType() {
super();
}
// -----------/
// - Methods -/
// -----------/
/**
* Overrides the java.lang.Object.equals method.
*
* @param obj
* @return true if the objects are equal.
*/
public boolean equals(final java.lang.Object obj) {
if (this == obj)
return true;
if (super.equals(obj) == false)
return false;
if (obj instanceof MapType) {
MapType temp = (MapType) obj;
boolean thcycle;
boolean tmcycle;
if (this._local != null) {
if (temp._local == null)
return false;
if (this._local != temp._local) {
thcycle = org.castor.core.util.CycleBreaker.startingToCycle(this._local);
tmcycle = org.castor.core.util.CycleBreaker.startingToCycle(temp._local);
if (thcycle != tmcycle) {
if (!thcycle) {
org.castor.core.util.CycleBreaker.releaseCycleHandle(this._local);
}
;
if (!tmcycle) {
org.castor.core.util.CycleBreaker.releaseCycleHandle(temp._local);
}
;
return false;
}
if (!thcycle) {
if (!this._local.equals(temp._local)) {
org.castor.core.util.CycleBreaker.releaseCycleHandle(this._local);
org.castor.core.util.CycleBreaker.releaseCycleHandle(temp._local);
return false;
}
org.castor.core.util.CycleBreaker.releaseCycleHandle(this._local);
org.castor.core.util.CycleBreaker.releaseCycleHandle(temp._local);
}
}
} else if (temp._local != null)
return false;
if (this._mapped != null) {
if (temp._mapped == null)
return false;
if (this._mapped != temp._mapped) {
thcycle = org.castor.core.util.CycleBreaker.startingToCycle(this._mapped);
tmcycle = org.castor.core.util.CycleBreaker.startingToCycle(temp._mapped);
if (thcycle != tmcycle) {
if (!thcycle) {
org.castor.core.util.CycleBreaker.releaseCycleHandle(this._mapped);
}
;
if (!tmcycle) {
org.castor.core.util.CycleBreaker.releaseCycleHandle(temp._mapped);
}
;
return false;
}
if (!thcycle) {
if (!this._mapped.equals(temp._mapped)) {
org.castor.core.util.CycleBreaker.releaseCycleHandle(this._mapped);
org.castor.core.util.CycleBreaker.releaseCycleHandle(temp._mapped);
return false;
}
org.castor.core.util.CycleBreaker.releaseCycleHandle(this._mapped);
org.castor.core.util.CycleBreaker.releaseCycleHandle(temp._mapped);
}
}
} else if (temp._mapped != null)
return false;
return true;
}
return false;
}
/**
* Returns the value of field 'local'.
*
* @return the value of field 'Local'.
*/
public uk.ac.vamsas.objects.core.Local getLocal() {
return this._local;
}
/**
* Returns the value of field 'mapped'.
*
* @return the value of field 'Mapped'.
*/
public uk.ac.vamsas.objects.core.Mapped getMapped() {
return this._mapped;
}
/**
* Overrides the java.lang.Object.hashCode method.
* <p>
* The following steps came from <b>Effective Java Programming Language
* Guide</b> by Joshua Bloch, Chapter 3
*
* @return a hash code value for the object.
*/
public int hashCode() {
int result = super.hashCode();
long tmp;
if (_local != null && !org.castor.core.util.CycleBreaker.startingToCycle(_local)) {
result = 37 * result + _local.hashCode();
org.castor.core.util.CycleBreaker.releaseCycleHandle(_local);
}
if (_mapped != null
&& !org.castor.core.util.CycleBreaker.startingToCycle(_mapped)) {
result = 37 * result + _mapped.hashCode();
org.castor.core.util.CycleBreaker.releaseCycleHandle(_mapped);
}
return result;
}
/**
* Method isValid.
*
* @return true if this object is valid according to the schema
*/
public boolean isValid() {
try {
validate();
} catch (org.exolab.castor.xml.ValidationException vex) {
return false;
}
return true;
}
/**
*
*
* @param out
* @throws org.exolab.castor.xml.MarshalException
* if object is null or if any SAXException is thrown during
* marshaling
* @throws org.exolab.castor.xml.ValidationException
* if this object is an invalid instance according to the schema
*/
public void marshal(final java.io.Writer out)
throws org.exolab.castor.xml.MarshalException,
org.exolab.castor.xml.ValidationException {
Marshaller.marshal(this, out);
}
/**
*
*
* @param handler
* @throws java.io.IOException
* if an IOException occurs during marshaling
* @throws org.exolab.castor.xml.ValidationException
* if this object is an invalid instance according to the schema
* @throws org.exolab.castor.xml.MarshalException
* if object is null or if any SAXException is thrown during
* marshaling
*/
public void marshal(final org.xml.sax.ContentHandler handler)
throws java.io.IOException, org.exolab.castor.xml.MarshalException,
org.exolab.castor.xml.ValidationException {
Marshaller.marshal(this, handler);
}
/**
* Sets the value of field 'local'.
*
* @param local
* the value of field 'local'.
*/
public void setLocal(final uk.ac.vamsas.objects.core.Local local) {
this._local = local;
}
/**
* Sets the value of field 'mapped'.
*
* @param mapped
* the value of field 'mapped'.
*/
public void setMapped(final uk.ac.vamsas.objects.core.Mapped mapped) {
this._mapped = mapped;
}
/**
* Method unmarshal.
*
* @param reader
* @throws org.exolab.castor.xml.MarshalException
* if object is null or if any SAXException is thrown during
* marshaling
* @throws org.exolab.castor.xml.ValidationException
* if this object is an invalid instance according to the schema
* @return the unmarshaled uk.ac.vamsas.objects.core.MapType
*/
public static uk.ac.vamsas.objects.core.MapType unmarshal(
final java.io.Reader reader)
throws org.exolab.castor.xml.MarshalException,
org.exolab.castor.xml.ValidationException {
return (uk.ac.vamsas.objects.core.MapType) Unmarshaller.unmarshal(
uk.ac.vamsas.objects.core.MapType.class, reader);
}
/**
*
*
* @throws org.exolab.castor.xml.ValidationException
* if this object is an invalid instance according to the schema
*/
public void validate() throws org.exolab.castor.xml.ValidationException {
org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
validator.validate(this);
}
}
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