1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
|
Author: Andreas Tille <tille@debian.org>
Last-Update: Thu, 15 Sep 2016 22:26:26 +0200
Description: There is a dir bin/ containing some R files which
is removed in clean target. Just use a different output dir
that can be cleaned without problems
--- a/Makefile
+++ b/Makefile
@@ -15,7 +15,7 @@ SOURCES = src/Variant.cpp \
OBJECTS= $(SOURCES:.cpp=.o)
VCF_LIB_LOCAL:=$(shell pwd)
-BIN_DIR:=bin
+BIN_DIR:=binaries
LIB_DIR:=lib
SRC_DIR=src
INC_DIR:=include
@@ -111,7 +111,7 @@ BIN_SOURCES = src/vcfecho.cpp \
# src/vcfsom.cpp
#BINS = $(BIN_SOURCES:.cpp=)
-BINS = $(addprefix bin/,$(notdir $(BIN_SOURCES:.cpp=)))
+BINS = $(addprefix $(BIN_DIR)/,$(notdir $(BIN_SOURCES:.cpp=)))
SHORTBINS = $(notdir $(BIN_SOURCES:.cpp=))
# TABIX = tabixpp/tabix.o
@@ -177,7 +177,7 @@ $(FILEVERCMP): pre
ln -sf ../filevercmp/filevercmp.h $(VCF_LIB_LOCAL)/$(INC_DIR)/filevercmp.h
$(SHORTBINS): pre
- $(MAKE) bin/$@
+ $(MAKE) $(BIN_DIR)/$@
$(BINS): $(BIN_SOURCES) libvcflib.so $(OBJECTS) $(SMITHWATERMAN) $(DISORDER) $(LEFTALIGN) $(INDELALLELE) $(SSW) $(FILEVERCMP) pre intervaltree
$(CXX) src/$(notdir $@).cpp -o $@ $(INCLUDES) $(LDFLAGS) $(CXXFLAGS)
|
