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[submodule "smithwaterman"]
path = contrib/smithwaterman
url = https://github.com/ekg/smithwaterman.git
[submodule "multichoose"]
path = contrib/multichoose
url = https://github.com/vcflib/multichoose.git
[submodule "fastahack"]
path = contrib/fastahack
url = https://github.com/ekg/fastahack.git
[submodule "intervaltree"]
path = contrib/intervaltree
url = https://github.com/ekg/intervaltree.git
[submodule "fsom"]
path = contrib/fsom
url = https://github.com/ekg/fsom.git
[submodule "filevercmp"]
path = contrib/filevercmp
url = https://github.com/ekg/filevercmp.git
[submodule "googletest"]
path = googletest
url = https://github.com/google/googletest.git
[submodule "libVCFH"]
path = contrib/libVCFH
url = https://github.com/edawson/libVCFH.git
[submodule "src/simde"]
path = src/simde
url = https://github.com/simd-everywhere/simde-no-tests.git
[submodule "contrib/tabixpp"]
path = contrib/tabixpp
url = https://github.com/vcflib/tabixpp.git
branch = master
[submodule "contrib/WFA2-lib"]
path = contrib/WFA2-lib
url = https://github.com/pjotrp/WFA2-lib
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