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Source: libvcflib
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper-compat (= 13),
architecture-is-64-bit,
architecture-is-little-endian,
# d-shlibs, # Switch to d-shlibs once shared and static lib are built
cmake,
discount <!nodoc>,
libtabixpp-dev,
libbz2-dev,
libdisorder-dev,
libhts-dev,
libsmithwaterman-dev,
libssw-dev,
libfastahack-dev,
libwfa2-dev,
pkgconf,
libgtest-dev <!nocheck>,
python3-dev,
python3-pybind11
Standards-Version: 4.7.0
Vcs-Browser: https://salsa.debian.org/med-team/libvcflib
Vcs-Git: https://salsa.debian.org/med-team/libvcflib.git
Homepage: https://github.com/vcflib/vcflib
Rules-Requires-Root: no
Package: libvcflib2
Architecture: any
Multi-Arch: same
Section: libs
Depends: ${shlibs:Depends},
${misc:Depends}
Description: C++ library for parsing and manipulating VCF files
The Variant Call Format (VCF) is a flat-file, tab-delimited textual format
intended to concisely describe reference-indexed variations between
individuals. VCF provides a common interchange format for the description of
variation in individuals and populations of samples, and has become the defacto
standard reporting format for a wide array of genomic variant detectors.
.
vcflib provides methods to manipulate and interpret sequence variation as it
can be described by VCF. It is both:
.
* an API for parsing and operating on records of genomic variation as it can
be described by the VCF format,
* and a collection of command-line utilities for executing complex
manipulations on VCF files.
Package: libvcflib-dev
Architecture: any
Multi-Arch: same
Section: libdevel
Depends: ${misc:Depends},
libvcflib2 (= ${binary:Version}),
libdisorder-dev,
libfastahack-dev,
libtabixpp-dev,
libsmithwaterman-dev,
libssw-dev,
libwfa2-dev
Description: C++ library for parsing and manipulating VCF files (development)
The Variant Call Format (VCF) is a flat-file, tab-delimited textual format
intended to concisely describe reference-indexed variations between
individuals. VCF provides a common interchange format for the description of
variation in individuals and populations of samples, and has become the defacto
standard reporting format for a wide array of genomic variant detectors.
.
vcflib provides methods to manipulate and interpret sequence variation as it
can be described by VCF. It is both:
.
* an API for parsing and operating on records of genomic variation as it can
be described by the VCF format,
* and a collection of command-line utilities for executing complex
manipulations on VCF files.
.
This package contains the static library and the header files.
Package: libvcflib-tools
Architecture: any
Depends: ${shlibs:Depends},
${misc:Depends},
python3:any,
r-base-core,
r-cran-plyr,
r-cran-ggplot2,
r-cran-gridbase
Suggests: r-cran-pracma
Description: C++ library for parsing and manipulating VCF files (tools)
The Variant Call Format (VCF) is a flat-file, tab-delimited textual format
intended to concisely describe reference-indexed variations between
individuals. VCF provides a common interchange format for the description of
variation in individuals and populations of samples, and has become the defacto
standard reporting format for a wide array of genomic variant detectors.
.
vcflib provides methods to manipulate and interpret sequence variation as it
can be described by VCF. It is both:
.
* an API for parsing and operating on records of genomic variation as it can
be described by the VCF format,
* and a collection of command-line utilities for executing complex
manipulations on VCF files.
.
This package contains several tools using the library.
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