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% GENOTYPESUMMARY(1) genotypeSummary (vcflib) | genotypeSummary (VCF statistics)
% Erik Garrison and vcflib contributors
# NAME
**genotypeSummary**
# SYNOPSIS
genotypeSummmary --type PL --target 0,1,2,3,4,5,6,7 --file my.vcf --snp
# DESCRIPTION
Generates a table of genotype counts. Summarizes genotype counts for bi-allelic SNVs and indel
# OPTIONS
```
output: table of genotype counts for each individual.
required: t,target -- a zero based comma separated list of target individuals corresponding to VCF columns
required: f,file -- proper formatted VCF
required, y,type -- genotype likelihood format; genotype : GL,PL,GP
optional, r,region -- a tabix compliant region : chr1:1-1000 or chr1
optional, s,snp -- Only count SNPs
optional, a,ancestral -- describe counts relative to the ancestral allele defined as AA in INFO
Type: statistics
```
# EXIT VALUES
**0**
: Success
**not 0**
: Failure
# SEE ALSO
[vcflib](./vcflib.md)(1)
# OTHER
## Source code
[genotypeSummary.cpp](https://github.com/vcflib/vcflib/blob/master/src/genotypeSummary.cpp)
# LICENSE
Copyright 2011-2024 (C) Erik Garrison and vcflib contributors. MIT licensed.
Copyright 2020-2024 (C) Pjotr Prins.
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