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% PERMUTESMOOTH(1) permuteSmooth (vcflib) | permuteSmooth (VCF statistics)
% Erik Garrison and vcflib contributors
# NAME
**permuteSmooth**
# SYNOPSIS
**permuteSmooth** -s wcFst.smooth.txt -f wcFst.txt -n 5 -s 1
# DESCRIPTION
**permuteSmooth** is a method for adding empirical p-values smoothed wcFst scores.
# OPTIONS
```
Required:
file: f -- argument: original wcFst data
smoothed: s -- argument: smoothed wcFst data
format: y -- argument: [swcFst, segwcFst]
Optional:
number: n -- argument: the number of permutations to run for each value [1000]
success: u -- argument: stop permutations after 's' successes [1]
success: x -- argument: number of threads [1]
OUTPUT: **permuteSmooth** will append three additional columns:
1. The number of successes
2. The number of trials
3. The empirical p-value
Type: statistics
```
# EXIT VALUES
**0**
: Success
**not 0**
: Failure
# SEE ALSO
[vcflib](./vcflib.md)(1)
# OTHER
## Source code
[permuteSmooth.cpp](https://github.com/vcflib/vcflib/blob/master/src/permuteSmooth.cpp)
# LICENSE
Copyright 2011-2024 (C) Erik Garrison and vcflib contributors. MIT licensed.
Copyright 2020-2024 (C) Pjotr Prins.
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