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% PLOTHAPS(1) plotHaps (vcflib) | plotHaps (VCF statistics)
% Erik Garrison and vcflib contributors
# NAME
**plotHaps**
# SYNOPSIS
# DESCRIPTION
**plotHaps** provides the formatted output that can be used with 'bin/plotHaplotypes.R'.
# OPTIONS
```
Output : haplotype matrix and positions
**plotHaps** --target 0,1,2,3,4,5,6,7 --file my.phased.vcf.gz
required: t,target -- argument: a zero base comma separated list of target individuals corrisponding to VCF column s
required: r,region -- argument: a tabix compliant genomic range : "seqid:start-end" or "seqid"
required: f,file -- argument: proper formatted phased VCF file
required: y,type -- argument: genotype likelihood format: PL,GP,GP
Type: statistics
```
# EXIT VALUES
**0**
: Success
**not 0**
: Failure
# SEE ALSO
[vcflib](./vcflib.md)(1)
# OTHER
## Source code
[plotHaps.cpp](https://github.com/vcflib/vcflib/blob/master/src/plotHaps.cpp)
# LICENSE
Copyright 2011-2024 (C) Erik Garrison and vcflib contributors. MIT licensed.
Copyright 2020-2024 (C) Pjotr Prins.
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