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% VCF2DAG(1) vcf2dag (vcflib) | vcf2dag (VCF transformation)
% Erik Garrison and vcflib contributors
# NAME
**vcf2dag**
# SYNOPSIS
**vcf2dag** [options] [<vcf file>]
# DESCRIPTION
Modify VCF to be able to build a directed acyclic graph (DAG)
# OPTIONS
```
options:
-r, --reference FILE FASTA reference file.
Modify the VCF file so that homozygous regions are included as REF/. calls.
For each ref and alt allele, assign an index. These steps are sufficient to
enable use of the VCF as a DAG (specifically a partially-ordered graph).
Type: transformation
```
# EXIT VALUES
**0**
: Success
**not 0**
: Failure
# SEE ALSO
[vcflib](./vcflib.md)(1)
# OTHER
## Source code
[vcf2dag.cpp](https://github.com/vcflib/vcflib/blob/master/src/vcf2dag.cpp)
# LICENSE
Copyright 2011-2024 (C) Erik Garrison and vcflib contributors. MIT licensed.
Copyright 2020-2024 (C) Pjotr Prins.
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