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% VCF2FASTA(1) vcf2fasta (vcflib) | vcf2fasta (VCF transformation)
% Erik Garrison and vcflib contributors
# NAME
**vcf2fasta**
# SYNOPSIS
**vcf2fasta** [options] [file]
# DESCRIPTION
Generates sample_seq:N.fa for each sample, reference sequence, and chromosomal copy N in [0,1... ploidy]. Each sequence in the fasta file is named using the same pattern used for the file name, allowing them to be combined.
# OPTIONS
```
options:
-f, --reference REF Use this reference when decomposing samples.
-p, --prefix PREFIX Affix this output prefix to each file, none by default
-P, --default-ploidy N Set a default ploidy for samples which do not have
information in the first record (2).
-n VAL Set string value to output for missing calls
Type: transformation
```
# EXIT VALUES
**0**
: Success
**not 0**
: Failure
# SEE ALSO
[vcflib](./vcflib.md)(1)
# OTHER
## Source code
[vcf2fasta.cpp](https://github.com/vcflib/vcflib/blob/master/src/vcf2fasta.cpp)
# LICENSE
Copyright 2011-2024 (C) Erik Garrison and vcflib contributors. MIT licensed.
Copyright 2020-2024 (C) Pjotr Prins.
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