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% VCFANNOTATEGENOTYPES(1) vcfannotategenotypes (vcflib) | vcfannotategenotypes (VCF transformation)
% Erik Garrison and vcflib contributors
# NAME
**vcfannotategenotypes**
# SYNOPSIS
**vcfannotategenotypes** <annotation-tag> <vcf file> <vcf file>
# DESCRIPTION
Examine genotype correspondence. Annotate genotypes in the first file with genotypes in the second adding the genotype as another flag to each sample filed in the first file. annotation-tag is the name of the sample flag which is added to store the annotation. also adds a 'has_variant' flag for sites where the second file has a variant.
# OPTIONS
```
Type: transformation
```
# EXIT VALUES
**0**
: Success
**not 0**
: Failure
# SEE ALSO
[vcflib](./vcflib.md)(1)
# OTHER
## Source code
[vcfannotategenotypes.cpp](https://github.com/vcflib/vcflib/blob/master/src/vcfannotategenotypes.cpp)
# LICENSE
Copyright 2011-2024 (C) Erik Garrison and vcflib contributors. MIT licensed.
Copyright 2020-2024 (C) Pjotr Prins.
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