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% VCFCHECK(1) vcfcheck (vcflib) | vcfcheck (VCF metrics)
% Erik Garrison and vcflib contributors
# NAME
**vcfcheck**
# SYNOPSIS
**vcfcheck** [options] <vcf file>
# DESCRIPTION
Validate integrity and identity of the VCF by verifying that the VCF record's REF matches a given reference file.
# OPTIONS
```
options:
-f, --fasta-reference FASTA reference file to use to obtain primer sequences.
-x, --exclude-failures If a record fails, don't print it. Otherwise do.
-k, --keep-failures Print if the record fails, otherwise not.
-i, --ignore-case Ignore case differences between FASTA reference and vcf.
-h, --help Print this message.
-v, --version Print version.
Type: metrics
```
# EXIT VALUES
**0**
: Success
**not 0**
: Failure
# SEE ALSO
[vcflib](./vcflib.md)(1)
# OTHER
## Source code
[vcfcheck.cpp](https://github.com/vcflib/vcflib/blob/master/src/vcfcheck.cpp)
# LICENSE
Copyright 2011-2024 (C) Erik Garrison and vcflib contributors. MIT licensed.
Copyright 2020-2024 (C) Pjotr Prins.
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