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% VCFCLEANCOMPLEX(1) vcfcleancomplex (vcflib) | vcfcleancomplex (VCF transformation)
% Erik Garrison and vcflib contributors
# NAME
**vcfcleancomplex**
# SYNOPSIS
**vcfcleancomplex** <vcf file>
# DESCRIPTION
Removes reference-matching sequence from complex alleles and adjusts records to reflect positional change.
# OPTIONS
```
Generate a VCF stream in which 'long' non-complexalleles have their position corrected.
assumes that VCF records can't overlap 5'->3'
Type: transformation
```
# EXIT VALUES
**0**
: Success
**not 0**
: Failure
# SEE ALSO
[vcflib](./vcflib.md)(1)
# OTHER
## Source code
[vcfcleancomplex.cpp](https://github.com/vcflib/vcflib/blob/master/src/vcfcleancomplex.cpp)
# LICENSE
Copyright 2011-2024 (C) Erik Garrison and vcflib contributors. MIT licensed.
Copyright 2020-2024 (C) Pjotr Prins.
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