1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77
|
% VCFSITESUMMARIZE(1) vcfsitesummarize (vcflib) | vcfsitesummarize (VCF statistics)
% Erik Garrison and vcflib contributors
# NAME
**vcfsitesummarize**
# SYNOPSIS
**vcfsitesummarize** <vcf file>
# DESCRIPTION
Summarize by site
# EXAMPLES
```
Example:
**vcfsitesummarize** samples/sample.vcf
CHROM POS ID REF QUAL FILTER AA AC AF AN DP NS DB H2
19 111 . A 9.6 . 0 0
19 112 . A 10 . 0 0
20 14370 rs6054257 G 29 PASS 0.5 14 3 1 1
20 17330 . T 3 q10 0.017 11 3 0 0
20 1110696 rs6040355 A 67 PASS T 10 2 1 0
20 1230237 . T 47 PASS T 13 3 0 0
20 1234567 microsat1 G 50 PASS G 6 9 3 0 0
20 1235237 . T 0 . 0 0
X 10 rsTest AC 10 PASS
Type: statistics
```
# EXIT VALUES
**0**
: Success
**not 0**
: Failure
# SEE ALSO
[vcflib](./vcflib.md)(1)
# OTHER
## Source code
[vcfsitesummarize.cpp](https://github.com/vcflib/vcflib/blob/master/src/vcfsitesummarize.cpp)
# LICENSE
Copyright 2011-2024 (C) Erik Garrison and vcflib contributors. MIT licensed.
Copyright 2020-2024 (C) Pjotr Prins.
<!--
Created with ./scripts/bin2md.rb scripts/bin2md-template.erb
-->
|