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% VCFSTATS(1) vcfstats (vcflib) | vcfstats (VCF statistics)
% Erik Garrison and vcflib contributors
# NAME
**vcfstats**
# SYNOPSIS
**vcfstats** [options] <vcf file>
# DESCRIPTION
Prints statistics about variants in the input VCF file.
# OPTIONS
```
-r, --region specify a region on which to target the stats, requires a BGZF
compressed file which has been indexed with tabix. any number of
regions may be specified.
-a, --add-info add the statistics intermediate information to the VCF file,
writing out VCF records instead of summary statistics
-t, --add-type only add the type= field to the info (faster than -a)
-l, --no-length-frequency don't out the indel and mnp length-frequency spectra
-m, --match-score N match score for SW algorithm
-x, --mismatch-score N mismatch score for SW algorithm
-o, --gap-open-penalty N gap open penalty for SW algorithm
-e, --gap-extend-penalty N gap extension penalty for SW algorithm
Type: statistics
```
# EXIT VALUES
**0**
: Success
**not 0**
: Failure
# SEE ALSO
[vcflib](./vcflib.md)(1)
# OTHER
## Source code
[vcfstats.cpp](https://github.com/vcflib/vcflib/blob/master/src/vcfstats.cpp)
# LICENSE
Copyright 2011-2024 (C) Erik Garrison and vcflib contributors. MIT licensed.
Copyright 2020-2024 (C) Pjotr Prins.
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