1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
|
.\" Automatically generated by Pandoc 2.19.2
.\"
.\" Define V font for inline verbatim, using C font in formats
.\" that render this, and otherwise B font.
.ie "\f[CB]x\f[]"x" \{\
. ftr V B
. ftr VI BI
. ftr VB B
. ftr VBI BI
.\}
.el \{\
. ftr V CR
. ftr VI CI
. ftr VB CB
. ftr VBI CBI
.\}
.TH "VCFANNOTATEGENOTYPES" "1" "" "vcfannotategenotypes (vcflib)" "vcfannotategenotypes (VCF transformation)"
.hy
.SH NAME
.PP
\f[B]vcfannotategenotypes\f[R]
.SH SYNOPSIS
.PP
\f[B]vcfannotategenotypes\f[R]
.SH DESCRIPTION
.PP
Examine genotype correspondence.
Annotate genotypes in the first file with genotypes in the second adding
the genotype as another flag to each sample filed in the first file.
annotation-tag is the name of the sample flag which is added to store
the annotation.
also adds a `has_variant' flag for sites where the second file has a
variant.
.SH OPTIONS
.IP
.nf
\f[C]
Type: transformation
\f[R]
.fi
.SH EXIT VALUES
.TP
\f[B]0\f[R]
Success
.TP
\f[B]not 0\f[R]
Failure
.SH SEE ALSO
.PP
\f[B]vcflib\f[R](1)
.SH OTHER
.SH LICENSE
.PP
Copyright 2011-2024 (C) Erik Garrison and vcflib contributors.
MIT licensed.
Copyright 2020-2024 (C) Pjotr Prins.
.SH AUTHORS
Erik Garrison and vcflib contributors.
|
