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.TH "VCFNULLGENOFIELDS" "1" "" "vcfnullgenofields (vcflib)" "vcfnullgenofields (VCF transformation)"
.hy
.SH NAME
.PP
\f[B]vcfnullgenofields\f[R]
.SH SYNOPSIS
.PP
\f[B]vcfnullgenofields\f[R] options
.SH DESCRIPTION
.PP
Makes the FORMAT for each variant line the same (uses all the FORMAT
fields described in the header).
Fills out per-sample fields to match FORMAT.
Expands GT values of `.' with number of alleles based on ploidy (eg:
`./.' for dipolid).
.SH OPTIONS
.IP
.nf
\f[C]
options:
-p, --ploidy N the polidy of missing/null GT fields (default=2)
-L, --expand_GL fill in missing GL fields with 0 values (eg: 0,0,0 for diploid 2 alleles)
Type: transformation
\f[R]
.fi
.SH EXIT VALUES
.TP
\f[B]0\f[R]
Success
.TP
\f[B]not 0\f[R]
Failure
.SH SEE ALSO
.PP
\f[B]vcflib\f[R](1)
.SH OTHER
.SH LICENSE
.PP
Copyright 2011-2024 (C) Erik Garrison and vcflib contributors.
MIT licensed.
Copyright 2020-2024 (C) Pjotr Prins.
.SH AUTHORS
Erik Garrison and vcflib contributors.
|
