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.\" Automatically generated by Pandoc 2.19.2
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.ie "\f[CB]x\f[]"x" \{\
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.el \{\
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.TH "VCFSITESUMMARIZE" "1" "" "vcfsitesummarize (vcflib)" "vcfsitesummarize (VCF statistics)"
.hy
.SH NAME
.PP
\f[B]vcfsitesummarize\f[R]
.SH SYNOPSIS
.PP
\f[B]vcfsitesummarize\f[R]
.SH DESCRIPTION
.PP
Summarize by site
.SH EXAMPLES
.IP
.nf
\f[C]
Example:
**vcfsitesummarize** samples/sample.vcf
CHROM POS ID REF QUAL FILTER AA AC AF AN DP NS DB H2
19 111 . A 9.6 . 0 0
19 112 . A 10 . 0 0
20 14370 rs6054257 G 29 PASS 0.5 14 3 1 1
20 17330 . T 3 q10 0.017 11 3 0 0
20 1110696 rs6040355 A 67 PASS T 10 2 1 0
20 1230237 . T 47 PASS T 13 3 0 0
20 1234567 microsat1 G 50 PASS G 6 9 3 0 0
20 1235237 . T 0 . 0 0
X 10 rsTest AC 10 PASS
Type: statistics
\f[R]
.fi
.SH EXIT VALUES
.TP
\f[B]0\f[R]
Success
.TP
\f[B]not 0\f[R]
Failure
.SH SEE ALSO
.PP
\f[B]vcflib\f[R](1)
.SH OTHER
.SH LICENSE
.PP
Copyright 2011-2024 (C) Erik Garrison and vcflib contributors.
MIT licensed.
Copyright 2020-2024 (C) Pjotr Prins.
.SH AUTHORS
Erik Garrison and vcflib contributors.
|
