File: vcfplotaltdiscrepancy.sh

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libvcflib 1.0.12%2Bdfsg-1
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#!/bin/bash
# Plot ALT discrepancy runner

filename=$1
tag=$2

vcf2tsv \
    | tsvsplit \
        QUAL \
        AC \
        $tag.has_variant \
    | tf2binary \
    | vcfplotsitediscrepancy.r $filename $tag