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|
% <%= cmd.upcase %>(1) <%= cmd %> <%= VERSION %> | <%= descr %>
% Erik Garrison and vcflib contributors
# NAME
<%= cmd %>
# SYNOPSIS
<%= usage %>
# DESCRIPTION
<%= descr %>
# OPTIONS
<%= options %>
# EXIT VALUES
**0**
: Success
**not 0**
: Failure
# EXAMPLES
<!--
>>> from pytest.rtest import run_stdout, head, cat
-->
```
>>> head("<%= cmd %> -h",1)
<%= usage_full %>
```
<%= cmd %> does something
```python
>>> head("<%= cmd %> ../samples/sample.vcf")
#CHROM POS ID REF ALT QUAL FILTER AA AC AF AN DB DP H2 NS
19 111 . A C 9.6 . . . . . . . . .
19 112 . A G 10 . . . . . . . . .
20 14370 rs6054257 G A 29 PASS . . 0.5 . . 14 . 3
```
## Source code
[<%= cmd %>.cpp](../../src/<%= cmd %>.cpp)
## Regression tests
The following commands run full regression tests:
>>> run_stdout("<%= cmd %> ../samples/sample.vcf", ext="tsv")
output in <a href="../data/regression/<%= cmd %>_4.tsv"><%= cmd %>_4.tsv</a>
# LICENSE
Copyright 2011-<%= year %> (C) Erik Garrison and vcflib contributors. MIT licensed.
Copyright 2020-<%= year %> (C) Pjotr Prins.
|
