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% SEGMENTIHS(1) segmentIhs (vcflib) | segmentIhs (VCF statistics)
% Erik Garrison and vcflib contributors
# NAME
**segmentIhs**
# SYNOPSIS
segmentFst -s 2 -f iHS.normalized.output.txt
# DESCRIPTION
Creates genomic segments (bed file) for regions with high wcFst
# OPTIONS
```
Output : 8 columns :
1. Seqid
2. Start (zero based)
3. End (zero based)
4. Average iHS
5. Average high Fst (iHS > -s)
6. N iHS values in segment
7. N high iHS values in segment
8. Segment length
required: -f -- Output from normalizeIHS
optional: -s -- High absolute iHS cutoff [2]
Type: statistics
```
# EXIT VALUES
**0**
: Success
**not 0**
: Failure
# SEE ALSO
[vcflib](./vcflib.md)(1)
# OTHER
## Source code
[segmentIhs.cpp](https://github.com/vcflib/vcflib/blob/master/src/segmentIhs.cpp)
# LICENSE
Copyright 2011-2024 (C) Erik Garrison and vcflib contributors. MIT licensed.
Copyright 2020-2024 (C) Pjotr Prins.
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