1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
|
% VCFCLEANCOMPLEX(1) vcfcleancomplex (vcflib) | vcfcleancomplex (VCF transformation)
% Erik Garrison and vcflib contributors
# NAME
**vcfcleancomplex**
# SYNOPSIS
**vcfcleancomplex** <vcf file>
# DESCRIPTION
Removes reference-matching sequence from complex alleles and adjusts records to reflect positional change.
# OPTIONS
```
Generate a VCF stream in which 'long' non-complexalleles have their position corrected.
assumes that VCF records can't overlap 5'->3'
Type: transformation
```
# EXIT VALUES
**0**
: Success
**not 0**
: Failure
# SEE ALSO
[vcflib](./vcflib.md)(1)
# OTHER
## Source code
[vcfcleancomplex.cpp](https://github.com/vcflib/vcflib/blob/master/src/vcfcleancomplex.cpp)
# LICENSE
Copyright 2011-2020 (C) Erik Garrison and vcflib contributors. MIT licensed.
<!--
Created with ./scripts/bin2md.rb scripts/bin2md-template.erb
-->
|
