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.\" Automatically generated by Pandoc 2.7.3
.\"
.TH "PERMUTESMOOTH" "1" "" "permuteSmooth (vcflib)" "permuteSmooth (VCF statistics)"
.hy
.SH NAME
.PP
\f[B]permuteSmooth\f[R]
.SH SYNOPSIS
.PP
\f[B]permuteSmooth\f[R] -s wcFst.smooth.txt -f wcFst.txt -n 5 -s 1
.SH DESCRIPTION
.PP
\f[B]permuteSmooth\f[R] is a method for adding empirical p-values
smoothed wcFst scores.
.SH OPTIONS
.IP
.nf
\f[C]
Required:
file: f -- argument: original wcFst data
smoothed: s -- argument: smoothed wcFst data
format: y -- argument: [swcFst, segwcFst]
Optional:
number: n -- argument: the number of permutations to run for each value [1000]
success: u -- argument: stop permutations after \[aq]s\[aq] successes [1]
success: x -- argument: number of threads [1]
OUTPUT: **permuteSmooth** will append three additional columns:
1. The number of successes
2. The number of trials
3. The empirical p-value
Type: statistics
\f[R]
.fi
.SH EXIT VALUES
.TP
.B \f[B]0\f[R]
Success
.TP
.B \f[B]not 0\f[R]
Failure
.SH SEE ALSO
.PP
\f[B]vcflib\f[R](1)
.SH OTHER
.SH LICENSE
.PP
Copyright 2011-2020 (C) Erik Garrison and vcflib contributors.
MIT licensed.
.SH AUTHORS
Erik Garrison and vcflib contributors.
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