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.\" Automatically generated by Pandoc 2.7.3
.\"
.TH "SEGMENTIHS" "1" "" "segmentIhs (vcflib)" "segmentIhs (VCF statistics)"
.hy
.SH NAME
.PP
\f[B]segmentIhs\f[R]
.SH SYNOPSIS
.PP
segmentFst -s 2 -f iHS.normalized.output.txt
.SH DESCRIPTION
.PP
Creates genomic segments (bed file) for regions with high wcFst
.SH OPTIONS
.IP
.nf
\f[C]
Output : 8 columns :
1. Seqid
2. Start (zero based)
3. End (zero based)
4. Average iHS
5. Average high Fst (iHS > -s)
6. N iHS values in segment
7. N high iHS values in segment
8. Segment length
required: -f -- Output from normalizeIHS
optional: -s -- High absolute iHS cutoff [2]
Type: statistics
\f[R]
.fi
.SH EXIT VALUES
.TP
.B \f[B]0\f[R]
Success
.TP
.B \f[B]not 0\f[R]
Failure
.SH SEE ALSO
.PP
\f[B]vcflib\f[R](1)
.SH OTHER
.SH LICENSE
.PP
Copyright 2011-2020 (C) Erik Garrison and vcflib contributors.
MIT licensed.
.SH AUTHORS
Erik Garrison and vcflib contributors.
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