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.\" Automatically generated by Pandoc 2.7.3
.\"
.TH "VCF2FASTA" "1" "" "vcf2fasta (vcflib)" "vcf2fasta (VCF transformation)"
.hy
.SH NAME
.PP
\f[B]vcf2fasta\f[R]
.SH SYNOPSIS
.PP
\f[B]vcf2fasta\f[R] options [file]
.SH DESCRIPTION
.PP
Generates sample_seq:N.fa for each sample, reference sequence, and
chromosomal copy N in [0,1\&... ploidy].
Each sequence in the fasta file is named using the same pattern used for
the file name, allowing them to be combined.
.SH OPTIONS
.IP
.nf
\f[C]
options:
-f, --reference REF Use this reference when decomposing samples.
-p, --prefix PREFIX Affix this output prefix to each file, none by default
-P, --default-ploidy N Set a default ploidy for samples which do not have information in the first record (2).
Type: transformation
\f[R]
.fi
.SH EXIT VALUES
.TP
.B \f[B]0\f[R]
Success
.TP
.B \f[B]not 0\f[R]
Failure
.SH SEE ALSO
.PP
\f[B]vcflib\f[R](1)
.SH OTHER
.SH LICENSE
.PP
Copyright 2011-2020 (C) Erik Garrison and vcflib contributors.
MIT licensed.
.SH AUTHORS
Erik Garrison and vcflib contributors.
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