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.\" Automatically generated by Pandoc 2.7.3
.\"
.TH "VCFGENOTYPES" "1" "" "vcfgenotypes (vcflib)" "vcfgenotypes (VCF statistics)"
.hy
.SH NAME
.PP
\f[B]vcfgenotypes\f[R]
.SH SYNOPSIS
.PP
\f[B]vcfgenotypes\f[R]
.SH DESCRIPTION
.PP
Report the genotypes for each sample, for each variant in the VCF.
Convert the numerical represenation of genotypes provided by the GT
field to a human-readable genotype format.
.SH OPTIONS
.IP
.nf
\f[C]
\f[R]
.fi
.SH EXAMPLES
.IP
.nf
\f[C]
Example:
**vcfgenotypes** samples/sample.vcf
19 111 A C A,C NA00001:A/A NA00002:A/A NA00003:A/C
19 112 A G A,G NA00001:A/A NA00002:A/A NA00003:A/G
20 14370 G A G,A NA00001:G/G NA00002:G/A NA00003:A/A
20 17330 T A T,A NA00001:T/T NA00002:T/A NA00003:T/T
20 1110696 A G,T A,G,T NA00001:G/T NA00002:G/T NA00003:T/T
20 1230237 T . T,. NA00001:T/T NA00002:T/T NA00003:T/T
20 1234567 G GA,GAC G,GA,GAC NA00001:G/GA NA00002:G/GAC NA00003:GA/GA
20 1235237 T . T,. NA00001:T/T NA00002:T/T NA00003:./.
X 10 AC A,ATG AC,A,ATG NA00001:AC NA00002:AC/A NA00003:AC/ATG
Type: statistics
\f[R]
.fi
.SH EXIT VALUES
.TP
.B \f[B]0\f[R]
Success
.TP
.B \f[B]not 0\f[R]
Failure
.SH SEE ALSO
.PP
\f[B]vcflib\f[R](1)
.SH OTHER
.SH LICENSE
.PP
Copyright 2011-2020 (C) Erik Garrison and vcflib contributors.
MIT licensed.
.SH AUTHORS
Erik Garrison and vcflib contributors.
|
