File: vcfrandom.1

package info (click to toggle)
libvcflib 1.0.2%2Bdfsg-2
  • links: PTS, VCS
  • area: main
  • in suites: bullseye
  • size: 49,732 kB
  • sloc: cpp: 39,194; perl: 474; python: 321; ruby: 285; sh: 247; ansic: 198; makefile: 125; javascript: 94; lisp: 55
file content (68 lines) | stat: -rw-r--r-- 2,306 bytes parent folder | download
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
.\" Automatically generated by Pandoc 2.7.3
.\"
.TH "VCFRANDOM" "1" "" "vcfrandom (vcflib)" "vcfrandom (VCF statistics)"
.hy
.SH NAME
.PP
\f[B]vcfrandom\f[R]
.SH SYNOPSIS
.PP
\f[B]vcfrandom\f[R]
.SH DESCRIPTION
.PP
Generate a random VCF file
.SH EXAMPLES
.IP
.nf
\f[C]

Example:

    **vcfrandom**

##fileformat=VCFv4.0
##source=**vcfrandom**
##reference=/d2/data/references/build_37/human_reference_v37.fa
##phasing=none
##INFO=<ID=NS,Number=1,Type=Integer,Description=\[dq]Number of samples with data\[dq]>
##INFO=<ID=DP,Number=1,Type=Integer,Description=\[dq]Total read depth at the locus\[dq]>
##INFO=<ID=AC,Number=1,Type=Integer,Description=\[dq]Total number of alternate alleles in called genotypes\[dq]>
##INFO=<ID=AN,Number=1,Type=Integer,Description=\[dq]Total number of alleles in called genotypes\[dq]>
##INFO=<ID=AF,Number=1,Type=Float,Description=\[dq]Estimated allele frequency in the range (0,1]\[dq]>
##FORMAT=<ID=GT,Number=1,Type=String,Description=\[dq]Genotype\[dq]>
##FORMAT=<ID=GQ,Number=1,Type=Integer,Description=\[dq]Genotype Quality, the Phred-scaled marginal (or unconditional) probability of the called genotype\[dq]>
##FORMAT=<ID=DP,Number=1,Type=Integer,Description=\[dq]Read Depth\[dq]>
#CHROM  POS     ID      REF     ALT     QUAL    FILTER  INFO    FORMAT  bill
one     1       .       G       G,A     100     .       DP=83   GT:DP   0/1:1
one     2       .       G       G,A     100     .       DP=3    GT:DP   0/1:49
one     3       .       G       C,T     100     .       DP=5    GT:DP   0/1:12
one     4       .       C       G,T     100     .       DP=51   GT:DP   0/1:60
one     5       .       A       T,A     100     .       DP=31   GT:DP   0/1:89
one     6       .       T       T,A     100     .       DP=56   GT:DP   0/1:60
one     7       .       T       A,C     100     .       DP=78   GT:DP   0/1:75
one     8       .       T       G,A     100     .       DP=73   GT:DP   0/1:78
one     9       .       C       C,G     100     .       DP=42   GT:DP   0/1:67


Type: statistics

      
\f[R]
.fi
.SH EXIT VALUES
.TP
.B \f[B]0\f[R]
Success
.TP
.B \f[B]not 0\f[R]
Failure
.SH SEE ALSO
.PP
\f[B]vcflib\f[R](1)
.SH OTHER
.SH LICENSE
.PP
Copyright 2011-2020 (C) Erik Garrison and vcflib contributors.
MIT licensed.
.SH AUTHORS
Erik Garrison and vcflib contributors.