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.\" Automatically generated by Pandoc 2.7.3
.\"
.TH "VCFREMOVEABERRANTGENOTYPES" "1" "" "vcfremoveaberrantgenotypes (vcflib)" "vcfremoveaberrantgenotypes (VCF transformation)"
.hy
.SH NAME
.PP
\f[B]vcfremoveaberrantgenotypes\f[R]
.SH SYNOPSIS
.PP
\f[B]vcfremoveaberrantgenotypes\f[R]
.SH DESCRIPTION
.PP
strips samples which are homozygous but have observations implying
heterozygosity.
Remove samples for which the reported genotype (GT) and observation
counts disagree (AO, RO).
.SH OPTIONS
.IP
.nf
\f[C]
Type: transformation
\f[R]
.fi
.SH EXIT VALUES
.TP
.B \f[B]0\f[R]
Success
.TP
.B \f[B]not 0\f[R]
Failure
.SH SEE ALSO
.PP
\f[B]vcflib\f[R](1)
.SH OTHER
.SH LICENSE
.PP
Copyright 2011-2020 (C) Erik Garrison and vcflib contributors.
MIT licensed.
.SH AUTHORS
Erik Garrison and vcflib contributors.
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