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.\" Automatically generated by Pandoc 2.7.3
.\"
.TH "VCFROC" "1" "" "vcfroc (vcflib)" "vcfroc (VCF statistics)"
.hy
.SH NAME
.PP
\f[B]vcfroc\f[R]
.SH SYNOPSIS
.PP
\f[B]vcfroc\f[R] options []
.SH DESCRIPTION
.PP
Generates a pseudo-ROC curve using sensitivity and specificity estimated
against a putative truth set.
Thresholding is provided by successive QUAL cutoffs.
.SH OPTIONS
.IP
.nf
\f[C]
options:
-t, --truth-vcf FILE use this VCF as ground truth for ROC generation
-w, --window-size N compare records up to this many bp away (default 30)
-c, --complex directly compare complex alleles, don\[aq]t parse into primitives
-r, --reference FILE FASTA reference file
\f[R]
.fi
.SH EXIT VALUES
.TP
.B \f[B]0\f[R]
Success
.TP
.B \f[B]not 0\f[R]
Failure
.SH SEE ALSO
.PP
\f[B]vcflib\f[R](1)
.SH OTHER
.SH LICENSE
.PP
Copyright 2011-2020 (C) Erik Garrison and vcflib contributors.
MIT licensed.
.SH AUTHORS
Erik Garrison and vcflib contributors.
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