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% VCFANNOTATE(1) vcfannotate (vcflib) | vcfannotate (VCF transformation)
% Erik Garrison and vcflib contributors
# NAME
**vcfannotate**
# SYNOPSIS
**vcfannotate** [options] [<vcf file>]
# DESCRIPTION
Intersect the records in the VCF file with targets provided in a BED file. Intersections are done on the reference sequences in the VCF file. If no VCF filename is specified on the command line (last argument) the VCF read from stdin.
# OPTIONS
```
options:
-b, --bed use annotations provided by this BED file
-k, --key use this INFO field key for the annotations
-d, --default use this INFO field key for records without annotations
Type: transformation
```
# EXIT VALUES
**0**
: Success
**not 0**
: Failure
# SEE ALSO
[vcflib](./vcflib.md)(1)
# OTHER
## Source code
[vcfannotate.cpp](https://github.com/vcflib/vcflib/blob/master/src/vcfannotate.cpp)
# LICENSE
Copyright 2011-2022 (C) Erik Garrison and vcflib contributors. MIT licensed.
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