File: vcfglbound.md

package info (click to toggle)
libvcflib 1.0.3%2Bdfsg-2
  • links: PTS, VCS
  • area: main
  • in suites: bookworm
  • size: 49,628 kB
  • sloc: cpp: 39,244; perl: 474; python: 329; ruby: 285; sh: 247; ansic: 198; makefile: 131; javascript: 94; lisp: 57
file content (64 lines) | stat: -rw-r--r-- 853 bytes parent folder | download
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
% VCFGLBOUND(1) vcfglbound (vcflib) | vcfglbound (VCF transformation)
% Erik Garrison and vcflib contributors

# NAME

**vcfglbound**

# SYNOPSIS

**vcfglbound** [options] <vcf file>

# DESCRIPTION

Adjust GLs so that the maximum GL is 0 by dividing all GLs for each sample by the max.



# OPTIONS

```


Then cap (bound) at N (e.g. -10).options:
    -b, --bound N          Bound GLs to this limit.
    -x, --exclude-broken   If GLs are > 0, remove site.


Type: transformation

```





# EXIT VALUES

**0**
: Success

**not 0**
: Failure

# SEE ALSO



[vcflib](./vcflib.md)(1)



# OTHER

## Source code

[vcfglbound.cpp](https://github.com/vcflib/vcflib/blob/master/src/vcfglbound.cpp)

# LICENSE

Copyright 2011-2022 (C) Erik Garrison and vcflib contributors. MIT licensed.

<!--
  Created with ./scripts/bin2md.rb scripts/bin2md-template.erb
-->