1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
|
import os
import sys
import pprint
import difflib
import inspect
import re
from subprocess import Popen, PIPE
bindir = "../build"
regressiondir = "data/regression"
tmpdir = "tmp"
VERSION = open("../VERSION").read().strip()
def cat(cmd):
head(cmd, -1)
def head(cmd, lines=4):
cmd2 = cmd.split(" ")
# print("-------------------->",cmd2,file=sys.stderr)
cmd1 = cmd2[0]
if not os.path.isfile(cmd1):
cmd1 = f"{bindir}/{cmd1}"
cmds = [cmd1]+cmd2[1:]
p = Popen(cmds, stdout=PIPE, stderr=PIPE, close_fds=True)
output = p.communicate()
out = output[0]
if len(out) == 0:
# if stdout is empty fetch stderr
out = output[1]
# out=subprocess.check_output(cmd2, universal_newlines=True)
header = out.decode().expandtabs(tabsize=8).split("\n")[0:lines]
header = ['>' if l=='' else l for l in header]
header = [l.replace(VERSION+" ", "") for l in header]
header = [l.replace("../build/", "") for l in header]
print("\n".join(header))
def run_stdout(cmd, ext = "vcf"):
os.makedirs(tmpdir,exist_ok=True)
curframe = inspect.currentframe()
# pp = pprint.PrettyPrinter(indent=4)
# pp.pprint(inspect.getouterframes(curframe))
# print("------------n")
calframe = inspect.getouterframes(curframe, 1)
p = re.compile('\[([0-9])\]')
index = p.findall(calframe[1].filename)[0]
name = calframe[1].filename[0:-4]
if "doctest" in name:
name = name[9:-3]
else:
name = name[18:-1]
name += "_"+index
if ext:
name += "." + ext
tmpfn = tmpdir + "/" + name
os.system(f"{bindir}/{cmd} > {tmpfn}")
cmpfn = regressiondir+"/"+name
sys.stdout.writelines(difflib.unified_diff(open(cmpfn).readlines(),open(tmpfn).readlines(),cmpfn,tmpfn,n=1))
print(f"output in <a href=\"../data/regression/{name}\">{name}</a>")
|
