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/*
* The MIT License
*
* Wavefront Alignment Algorithms
* Copyright (c) 2017 by Santiago Marco-Sola <santiagomsola@gmail.com>
*
* This file is part of Wavefront Alignment Algorithms.
*
* Permission is hereby granted, free of charge, to any person obtaining a copy
* of this software and associated documentation files (the "Software"), to deal
* in the Software without restriction, including without limitation the rights
* to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
* copies of the Software, and to permit persons to whom the Software is
* furnished to do so, subject to the following conditions:
*
* The above copyright notice and this permission notice shall be included in all
* copies or substantial portions of the Software.
*
* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
* IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
* FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
* AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
* LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
* OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
* SOFTWARE.
*
* PROJECT: Wavefront Alignment Algorithms
* AUTHOR(S): Santiago Marco-Sola <santiagomsola@gmail.com>
* DESCRIPTION: DNA text encoding/decoding utils
*/
/*
* Pragmas
*/
#ifdef __clang__
#pragma GCC diagnostic ignored "-Winitializer-overrides"
#endif
/*
* Include
*/
#include "utils/commons.h"
#include "utils/dna_text.h"
/*
* Tables/Conversions Implementation
*/
const uint8_t dna_encode_table[256] =
{
[0 ... 255] = 4,
['A'] = 0, ['C'] = 1, ['G'] = 2, ['T'] = 3, ['N'] = 4,
['a'] = 0, ['c'] = 1, ['g'] = 2, ['t'] = 3, ['n'] = 4,
};
const char dna_decode_table[DNA_EXTENDED_RANGE] =
{
[ENC_DNA_CHAR_A] = DNA_CHAR_A,
[ENC_DNA_CHAR_C] = DNA_CHAR_C,
[ENC_DNA_CHAR_G] = DNA_CHAR_G,
[ENC_DNA_CHAR_T] = DNA_CHAR_T,
[ENC_DNA_CHAR_N] = DNA_CHAR_N,
};
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