1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
|
/*
* The MIT License
*
* Wavefront Alignment Algorithms
* Copyright (c) 2017 by Santiago Marco-Sola <santiagomsola@gmail.com>
*
* This file is part of Wavefront Alignment Algorithms.
*
* Permission is hereby granted, free of charge, to any person obtaining a copy
* of this software and associated documentation files (the "Software"), to deal
* in the Software without restriction, including without limitation the rights
* to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
* copies of the Software, and to permit persons to whom the Software is
* furnished to do so, subject to the following conditions:
*
* The above copyright notice and this permission notice shall be included in all
* copies or substantial portions of the Software.
*
* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
* IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
* FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
* AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
* LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
* OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
* SOFTWARE.
*
* PROJECT: Wavefront Alignment Algorithms
* AUTHOR(S): Santiago Marco-Sola <santiagomsola@gmail.com>
* DESCRIPTION: WaveFront alignment module for offloading partial backtraces
*/
#ifndef WAVEFRONT_BACKTRACE_OFFLOAD_H_
#define WAVEFRONT_BACKTRACE_OFFLOAD_H_
#include "wavefront_aligner.h"
/*
* Backtrace offloading (gap-linear)
*/
int wavefront_backtrace_offload_blocks_linear(
wavefront_aligner_t* const wf_aligner,
wf_offset_t* const out_offsets,
pcigar_t* const out_bt_pcigar,
bt_block_idx_t* const out_bt_prev,
const int lo,
const int hi);
void wavefront_backtrace_offload_linear(
wavefront_aligner_t* const wf_aligner,
const wavefront_set_t* const wavefront_set,
const int lo,
const int hi);
/*
* Backtrace offloading (gap-affine)
*/
int wavefront_backtrace_offload_blocks_affine(
wavefront_aligner_t* const wf_aligner,
wf_offset_t* const out_offsets,
pcigar_t* const out_bt_pcigar,
bt_block_idx_t* const out_bt_prev,
const int lo,
const int hi);
void wavefront_backtrace_offload_affine(
wavefront_aligner_t* const wf_aligner,
const wavefront_set_t* const wavefront_set,
const int lo,
const int hi);
#endif /* WAVEFRONT_BACKTRACE_OFFLOAD_H_ */
|
