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Introduction
============
This is the Zerg BLAST parsing library. It provides the
parsing engine used by the Perl module libzerg-perl.
Documentation
=============
Please refer to manpages Zerg and Zerg::Report in the module
libzerg-perl and to example programs in the package zerg-benchmarks.
Changes
=======
1.0.7 - 2009/01/27
- Fixed YY_BUF_SIZE in Makefile. Should be 2*YY_READ_BUF_SIZE.
- Fix: extra spaces after "Expect = " are now allowed. Bug reported by Laurent Manchon.
- Fix: "make" now aborts when flex is absent.
1.0.6 - 2007/08/10
- Added support for NCBI BLAST 2.2.15 and newer.
- NCBI BLAST 2.2.14 **NOT** supported.
- Added -fPIC option to enable compilation in 64-bit machines.
1.0.5 - 2005/01/10
- Fix: added zerg_close_file(). Bug reported by Marcos Renato Araujo.
1.0.3 - 2003/10/29
- fixed a dangling pointer bug in _zerg_strip_double_spaces()
- changed yy_current_buffer to YY_CURRENT_BUFFER in zerg_get_token_offset() in order to compile with flex 2.5.31
1.0.0 - 2002/08/21
- original version
License terms
=============
Copyright (C) 2002 ApuPaquola - Instituto de Qumica -
Universidade de So Paulo - Brasil
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with this program (see COPYING file); if not, write to the Free
Software Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA
02111-1307 USA
Installation
============
First, make sure that GNU flex is installed in your system.
Then, unpack libzerg.tar.gz:
gunzip -c libzerg.tar.gz | tar xf -
and:
make
Then, as root:
make install
This will create the directory /usr/local/libzerg. Next,
provide symbolic links to the installed files:
ln -s /usr/local/libzerg/lib/libzerg.a /usr/local/lib/libzerg.a
ln -s /usr/local/libzerg/include/zerg.h /usr/local/include/zerg.h
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