1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347
|
<!DOCTYPE html>
<!--[if IE 8]><html class="no-js lt-ie9" lang="en" > <![endif]-->
<!--[if gt IE 8]><!--> <html class="no-js" lang="en" > <!--<![endif]-->
<head>
<meta charset="utf-8">
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>7. Packages — LIGGGHTS v3.X documentation</title>
<link rel="stylesheet" href="_static/css/theme.css" type="text/css" />
<link rel="top" title="LIGGGHTS v3.X documentation" href="index.html"/>
<link rel="next" title="8. How-to discussions" href="Section_howto.html"/>
<link rel="prev" title="6. Mesh modules" href="Section_mesh_modules.html"/>
<script src="_static/js/modernizr.min.js"></script>
</head>
<body class="wy-body-for-nav" role="document">
<div class="wy-grid-for-nav">
<nav data-toggle="wy-nav-shift" class="wy-nav-side">
<div class="wy-side-scroll">
<div class="wy-side-nav-search">
<a href="Manual.html" class="icon icon-home"> LIGGGHTS
</a>
<div class="version">
v3.X
</div>
<div role="search">
<form id="rtd-search-form" class="wy-form" action="search.html" method="get">
<input type="text" name="q" placeholder="Search docs" />
<input type="hidden" name="check_keywords" value="yes" />
<input type="hidden" name="area" value="default" />
</form>
</div>
</div>
<div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="main navigation">
<ul class="current">
<li class="toctree-l1"><a class="reference internal" href="Section_intro.html">1. Introduction</a></li>
<li class="toctree-l1"><a class="reference internal" href="Section_start.html">2. Getting Started</a></li>
<li class="toctree-l1"><a class="reference internal" href="Section_input_script.html">3. Input Script</a></li>
<li class="toctree-l1"><a class="reference internal" href="Section_commands.html">4. Commands</a></li>
<li class="toctree-l1"><a class="reference internal" href="Section_gran_models.html">5. Contact models</a></li>
<li class="toctree-l1"><a class="reference internal" href="Section_mesh_modules.html">6. Mesh modules</a></li>
<li class="toctree-l1 current"><a class="current reference internal" href="">7. Packages</a></li>
<li class="toctree-l1"><a class="reference internal" href="Section_howto.html">8. How-to discussions</a></li>
<li class="toctree-l1"><a class="reference internal" href="Section_modify.html">9. Modifying & extending LIGGGHTS(R)-PUBLIC</a></li>
<li class="toctree-l1"><a class="reference internal" href="Section_python.html">10. Python interface to LIGGGHTS(R)-PUBLIC</a></li>
<li class="toctree-l1"><a class="reference internal" href="Section_errors.html">11. Errors</a></li>
</ul>
</div>
</div>
</nav>
<section data-toggle="wy-nav-shift" class="wy-nav-content-wrap">
<nav class="wy-nav-top" role="navigation" aria-label="top navigation">
<i data-toggle="wy-nav-top" class="fa fa-bars"></i>
<a href="Manual.html">LIGGGHTS</a>
</nav>
<div class="wy-nav-content">
<div class="rst-content">
<div role="navigation" aria-label="breadcrumbs navigation">
<ul class="wy-breadcrumbs">
<li><a href="Manual.html">Docs</a> »</li>
<li>7. Packages</li>
<li class="wy-breadcrumbs-aside">
<a href="_sources/Section_packages.txt" rel="nofollow"> View page source</a>
<a href="http://www.cfdem.com"> Website</a>
<a href="Section_commands.html#comm" rel="nofollow"> Commands</a>
</li>
</ul>
<hr/>
<div class="rst-footer-buttons" role="navigation" aria-label="footer navigation">
<a href="Section_howto.html" class="btn btn-neutral float-right" title="8. How-to discussions" accesskey="n">Next <span class="fa fa-arrow-circle-right"></span></a>
<a href="Section_mesh_modules.html" class="btn btn-neutral" title="6. Mesh modules" accesskey="p"><span class="fa fa-arrow-circle-left"></span> Previous</a>
</div>
</div>
<div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
<div itemprop="articleBody">
<div class="section" id="packages">
<h1>7. Packages<a class="headerlink" href="#packages" title="Permalink to this headline">ΒΆ</a></h1>
<p>This section gives a quick overview of the add-on packages that extend
LIGGGHTS(R)-PUBLIC functionality.</p>
<p>LIGGGHTS(R)-PUBLIC includes optional packages, which are groups of files that
enable a specific set of features. For example, force fields for
molecular systems or granular systems are in packages. You can see
the list of all packages by typing “make package” from within the src
directory of the LIGGGHTS(R)-PUBLIC distribution.</p>
<p>See <span class="xref std std-ref">Section_start 3</span> of the manual for
details on how to include/exclude specific packages as part of the
LIGGGHTS(R)-PUBLIC build process, and for more details about the differences
between standard packages and user packages in LIGGGHTS(R)-PUBLIC.</p>
<p>Below, the packages currently availabe in LIGGGHTS(R)-PUBLIC are listed. For
standard packages, just a one-line description is given:</p>
<table border="1" class="docutils">
<colgroup>
<col width="7%" />
<col width="23%" />
<col width="17%" />
<col width="38%" />
<col width="7%" />
<col width="8%" />
</colgroup>
<tbody valign="top">
<tr class="row-odd"><td>Package</td>
<td>Description</td>
<td>Author(s)</td>
<td>Doc page</td>
<td>Example</td>
<td>Library</td>
</tr>
<tr class="row-even"><td>MOLECULE</td>
<td>molecular system force fields</td>
<td><ul class="first last simple">
<li></li>
</ul>
</td>
<td><ul class="first last simple">
<li></li>
</ul>
</td>
<td><ul class="first last simple">
<li></li>
</ul>
</td>
<td><ul class="first last simple">
<li></li>
</ul>
</td>
</tr>
<tr class="row-odd"><td>POEMS</td>
<td>coupled rigid body motion</td>
<td>Rudra Mukherjee (JPL)</td>
<td><a class="reference internal" href="fix_poems.html"><em>fix poems</em></a></td>
<td>rigid</td>
<td>lib/poems</td>
</tr>
<tr class="row-even"><td>VORONOI</td>
<td>Voronoi tesselations</td>
<td>Daniel Schwen (LANL)</td>
<td><a class="reference internal" href="compute_voronoi_atom.html"><em>compute voronoi/atom</em></a></td>
<td><ul class="first last simple">
<li></li>
</ul>
</td>
<td>Voro++</td>
</tr>
<tr class="row-odd"><td> </td>
<td> </td>
<td> </td>
<td> </td>
<td> </td>
<td> </td>
</tr>
</tbody>
</table>
<p>The “Doc page” column links to either a portion of the
<a class="reference internal" href="Section_howto.html"><em>Section_howto</em></a> of the manual, or an input script
command implemented as part of the package.</p>
<p>The “Example” column is a sub-directory in the examples directory of
the distribution which has an input script that uses the package.
E.g. “peptide” refers to the examples/peptide directory.</p>
<p>The “Library” column lists an external library which must be built
first and which LIGGGHTS(R)-PUBLIC links to when it is built. If it is listed as
lib/package, then the code for the library is under the lib directory
of the LIGGGHTS(R)-PUBLIC distribution. See the lib/package/README file for info
on how to build the library. If it is not listed as lib/package, then
it is a third-party library not included in the LIGGGHTS(R)-PUBLIC distribution.
See the src/package/README or src/package/Makefile.lammps file for
info on where to download the library. <span class="xref std std-ref">Section start</span> of the manual also gives details
on how to build LIGGGHTS(R)-PUBLIC with both kinds of auxiliary libraries.</p>
</div>
</div>
<div class="articleComments">
</div>
</div>
<footer>
<div class="rst-footer-buttons" role="navigation" aria-label="footer navigation">
<a href="Section_howto.html" class="btn btn-neutral float-right" title="8. How-to discussions" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right"></span></a>
<a href="Section_mesh_modules.html" class="btn btn-neutral" title="6. Mesh modules" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left"></span> Previous</a>
</div>
<hr/>
<div role="contentinfo">
<p>
© Copyright 2016, DCS Computing GmbH, JKU Linz and Sandia Corporation.
</p>
</div>
Built with <a href="http://sphinx-doc.org/">Sphinx</a> using a <a href="https://github.com/snide/sphinx_rtd_theme">theme</a> provided by <a href="https://readthedocs.org">Read the Docs</a>.
</footer>
</div>
</div>
</section>
</div>
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
VERSION:'v3.X',
LANGUAGE:'None',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true,
SOURCELINK_SUFFIX: ''
};
</script>
<script type="text/javascript" src="_static/jquery.js"></script>
<script type="text/javascript" src="_static/underscore.js"></script>
<script type="text/javascript" src="_static/doctools.js"></script>
<script type="text/javascript" src="_static/js/theme.js"></script>
<script type="text/javascript">
jQuery(function () {
SphinxRtdTheme.StickyNav.enable();
});
</script>
</body>
</html>
|