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Modify mcmcsamp to return the deviance in the sample only when the
optional argument 'deviance' is TRUE (default FALSE).
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Replace the use of the unexported replacement function LMEoptimize<-
in lmer.R by the function LMEopt, which always returns NULL but
(in contradiction to the language specification) modifies its first argument.
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Modify the one-argument form of the anova method for lmer objects (yet
again) to calculate the F ratios. It is the df, not the ratio that
is controversial.
Should there be an extractor function for the mean square error? If
so, what should it be called?
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Determine what a "coef" function should do for multiple, possibly
non-nested, grouping factors.
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- add nicer (more realistic?) pedigree examples and tests
- document print(<mer>) including an example print(<lmer>, corr = FALSE)
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