File: example_expression_model.py

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"""
Using an ExpressionModel
========================

ExpressionModels allow a model to be built from a user-supplied expression.
See: https://lmfit.github.io/lmfit-py/builtin_models.html#user-defined-models

"""
import matplotlib.pyplot as plt
import numpy as np

from lmfit.models import ExpressionModel

###############################################################################
# Generate synthetic data for the user-supplied model:
x = np.linspace(-10, 10, 201)
amp, cen, wid = 3.4, 1.8, 0.5

y = amp * np.exp(-(x-cen)**2 / (2*wid**2)) / (np.sqrt(2*np.pi)*wid)
y = y + np.random.normal(size=x.size, scale=0.01)

###############################################################################
# Define the ExpressionModel and perform the fit:
gmod = ExpressionModel("amp * exp(-(x-cen)**2 /(2*wid**2))/(sqrt(2*pi)*wid)")
result = gmod.fit(y, x=x, amp=5, cen=5, wid=1)

###############################################################################
# this results in the following output:
print(result.fit_report())

plt.plot(x, y, 'bo')
plt.plot(x, result.init_fit, 'k--', label='initial fit')
plt.plot(x, result.best_fit, 'r-', label='best fit')
plt.legend(loc='best')
plt.show()