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Source: ltrsift
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Sascha Steinbiss <sascha@steinbiss.name>
Section: science
Priority: optional
Build-Depends: debhelper (>= 9),
libgenometools0-dev,
libgtk2.0-dev,
libglib2.0-dev
Standards-Version: 3.9.7
Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/ltrsift.git
Vcs-Git: https://anonscm.debian.org/git/debian-med/ltrsift.git
Homepage: http://www.zbh.uni-hamburg.de/LTRsift
Package: ltrsift
Architecture: any
Depends: ${shlibs:Depends},
${misc:Depends},
libgenometools0,
libgtk2.0-0,
libglib2.0-0
Recommends: last-align,
ncbi-blast+
Description: postprocessing and classification of LTR retrotransposons
LTRsift is a graphical desktop tool for semi-automatic postprocessing of de
novo predicted LTR retrotransposon annotations, such as the ones generated by
LTRharvest and LTRdigest. Its user-friendly interface displays LTR
retrotransposon candidates, their putative families and their internal
structure in a hierarchical fashion, allowing the user to "sift" through the
sometimes large results of de novo prediction software. It also offers
customizable filtering and classification functionality.
Package: ltrsift-dbg
Architecture: any
Section: debug
Priority: extra
Depends: ${shlibs:Depends},
${misc:Depends},
ltrsift (= ${binary:Version})
Description: postprocessing and classification of LTR retrotransposons, with debug symbols
This package contains debug information stripped from LTRsift.
You may decide to install it to help identifying issues, typically
to help communication with upstream developers.
Package: ltrsift-examples
Architecture: all
Depends: ${misc:Depends}
Suggests: ltrsift
Description: example data for LTRsift
This package contains test sequences (gzipped FASTA) and annotations (GFF3)
from the Drosophila melanogaster (fruit fly) genome, to be used in an example
process of postprocessing and classification of newly detected LTR
retrotransposons. Scripts for using LTRsift to encode the sequences into a
format accepted by LTRsift are included as well.
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