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# Copyright (c) 2012-2013 Sascha Steinbiss <steinbiss@zbh.uni-hamburg.de>
# Copyright (c) 2012 Sascha Kastens <mail@skastens.de>
# Copyright (c) 2012-2013 Center for Bioinformatics, University of Hamburg
ifndef CC
CC:=gcc
endif
CFLAGS += -g -Wall -Wunused-parameter
GT_FLAGS := -I$(gt_prefix)/include/genometools \
-I$(gt_prefix)/include/genometools -I$(GTDIR)/src
GT_FLAGS_STATIC := $(GT_FLAGS) `pkg-config --cflags --libs pango pangocairo`
GT_FLAGS += -lgenometools -L$(gt_prefix)/lib $(LDFLAGS)
GTK_FLAGS = `pkg-config --cflags --libs gtk+-2.0 gthread-2.0`
SOURCES := $(sort $(wildcard src/*.c))
OBJECTS := $(sort $(filter-out obj/src/ltrsift.o obj/src/ltrsift_encode.o, $(SOURCES:%.c=obj/%.o)))
# system specific stuff (concerning 64bit compilation)
MACHINE:=$(shell uname -m)
ifneq ($(opt),no)
CFLAGS += -O3
endif
ifeq ($(static),yes)
STATICBIN := bin/ltrsift_static bin/ltrsift_encode_static
endif
ifneq ($(errorcheck),no)
CFLAGS += -Werror
endif
# set prefix for location of genometools
gt_prefix ?= /usr/local
# set prefix for installation
prefix ?= /usr/local
.PREFIXES = .c .o
.PHONY: all clean cleanup dirs install
all: dirs bin/ltrsift bin/ltrsift_encode $(STATICBIN)
@(test -f bin/ltrsift_encode_static && \
cp bin/ltrsift_encode_static sample_data) \
|| (test -f bin/ltrsift_encode && \
cp bin/ltrsift_encode sample_data)
dirs: bin obj obj/src
obj/%.o: %.c
@echo "[compile $@]"
$(CC) -c $(CFLAGS) $(CPPFLAGS) $(GTK_FLAGS) $(GT_FLAGS) $< -o $(@)
bin/ltrsift: $(OBJECTS) obj/src/ltrsift.o
@echo "[linking $@]"
$(CC) $(OBJECTS) obj/src/ltrsift.o -o $@ $(CFLAGS) $(LDFLAGS) $(GTK_FLAGS) $(GT_FLAGS)
bin/ltrsift_encode: obj/src/ltrsift_encode.o
@echo "[linking $@]"
$(CC) obj/src/ltrsift_encode.o -o $@ $(CFLAGS) $(LDFLAGS) $(GT_FLAGS)
bin/ltrsift_static: obj/src/ltrsift.o $(OBJECTS) $(gt_prefix)/lib/libgenometools.a
@echo "[linking $@]"
$(CC) $(OBJECTS) obj/src/ltrsift.o $(gt_prefix)/lib/libgenometools.a \
-o $@ $(CFLAGS) $(LDFLAGS) $(GT_FLAGS_STATIC) $(GTK_FLAGS) -lbz2
bin/ltrsift_encode_static: obj/src/ltrsift_encode.o $(gt_prefix)/lib/libgenometools.a
@echo "[linking $@]"
$(CC) obj/src/ltrsift_encode.o $(gt_prefix)/lib/libgenometools.a \
-o $@ $(CFLAGS) $(LDFLAGS) \
$(GT_FLAGS_STATIC) -lbz2 -lz -lcairo -lm
bin obj obj/src:
@echo '[create $(@)]'
test -d $(@) || mkdir -p $(@)
clean:
rm -rf obj
cleanup: clean
rm -rf bin sample_data/ltrsift_encode sample_data/ltrsift_encode_static
.PHONY: dist srcdist install
SYSTEM:=$(shell uname -s)
MACHINE:=$(shell uname -m)
VERSION:="`cat $(CURDIR)/VERSION`"
SYSTEMNAME:="$(SYSTEM)_$(MACHINE)"
GTDISTBASENAME:="ltrsift-$(VERSION)-$(SYSTEMNAME)"
DISTDIR:="$(CURDIR)/dist/$(SYSTEMNAME)"
SCRIPTSDIR:="$(CURDIR)/scripts"
GTDISTDIR:="$(DISTDIR)/$(GTDISTBASENAME)"
dist: all
@echo "[build distribution]"
@rm -rf $(GTDISTDIR)
@rm -rf $(DISTDIR)/$(GTDISTBASENAME).tar.gz
@mkdir -p $(GTDISTDIR)/bin
@cp $(CURDIR)/LICENSE $(GTDISTDIR)
@cp $(CURDIR)/CHANGELOG $(GTDISTDIR)
@cp $(CURDIR)/VERSION $(GTDISTDIR)
@cp $(CURDIR)/README $(GTDISTDIR)
@cp $(CURDIR)/run_ltrsift $(GTDISTDIR)
@cp $(CURDIR)/bin/ltrsift $(GTDISTDIR)/bin
@strip $(GTDISTDIR)/bin/ltrsift
@(test -f bin/ltrsift_static && cp bin/ltrsift_static $(GTDISTDIR)/bin && strip $(GTDISTDIR)/bin/ltrsift_static) || true
@$(MAKE) prefix=$(GTDISTDIR) install
@cd $(DISTDIR) && $(SCRIPTSDIR)/tar_root.sh $(GTDISTBASENAME)
@cd $(DISTDIR) && gzip -f -9 $(GTDISTBASENAME).tar
@echo "$(DISTDIR)/$(GTDISTBASENAME).tar.gz"
srcdist:
git archive --format=tar --prefix=ltrsift-`cat VERSION`/ HEAD | \
gzip -9 > ltrsift-`cat VERSION`-src.tar.gz
install: all
test -d $(prefix)/bin || mkdir -p $(prefix)/bin
cp bin/* $(prefix)/bin
test -d $(prefix)/filters || mkdir -p $(prefix)/filters
cp -r filters/* $(prefix)/filters
test -d $(prefix)/sample_data || mkdir -p $(prefix)/sample_data
cp -r sample_data/* $(prefix)/sample_data
test -d $(prefix)/style || mkdir -p $(prefix)/style
cp -r style/* $(prefix)/style
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