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#include "genometools.h" /* include the GenomeTools ``all-in-one'' header */
int main(GT_UNUSED int argc, GT_UNUSED char *argv[])
{
GtEncseqEncoder *e = NULL;
GtStrArray *infiles = NULL;
GtError *err = NULL;
int had_err = 0;
gt_lib_init();
if (gt_version_check(GT_MAJOR_VERSION, GT_MINOR_VERSION, GT_MICRO_VERSION)) {
fprintf(stderr, "error: %s\n", gt_version_check(GT_MAJOR_VERSION,
GT_MINOR_VERSION,
GT_MICRO_VERSION));
return EXIT_FAILURE;
}
if (argc < 3 || !gt_file_exists(argv[1])) {
fprintf(stderr, "Usage: %s <sequence file> <indexname>\n", argv[0]);
gt_lib_clean();
return EXIT_FAILURE;
}
err = gt_error_new();
infiles = gt_str_array_new();
gt_str_array_add_cstr(infiles, argv[1]);
e = gt_encseq_encoder_new();
gt_encseq_encoder_enable_lossless_support(e);
had_err = gt_encseq_encoder_encode(e, infiles, argv[2], err);
gt_str_array_delete(infiles);
gt_encseq_encoder_delete(e);
gt_error_delete(err);
if (gt_lib_clean())
return GT_EXIT_PROGRAMMING_ERROR;
return had_err ? EXIT_FAILURE : EXIT_SUCCESS;
}
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