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lumpy-sv 0.3.1%2Bdfsg-7
  • links: PTS, VCS
  • area: main
  • in suites: bookworm, forky, trixie
  • size: 296,072 kB
  • sloc: cpp: 9,908; python: 1,768; sh: 1,384; makefile: 365; ansic: 322; perl: 58

Folder: scripts

d .. (parent)
d d rwxr-xr-x 10 bamkit
- - rwxr-xr-x 933 bedpe_sort.py
- - rwxr-xr-x 1,768 check_sorting.py
- - rwxr-xr-x 2,614 cnvanator_to_bedpes.py
- - rw-r--r-- 739 extract-sites.py
- - rwxr-xr-x 6,218 extractSplitReads_BwaMem
- - rwxr-xr-x 1,823 get_coverages.py
- - rwxr-xr-x 770 get_exclude_regions.py
- - rw-r--r-- 10,926 l_bp.py
- - rwxr-xr-x 22,145 l_merge.py
- - rwxr-xr-x 1,986 l_sort.py
- - rwxr-xr-x 7,592 lumpy_smooth
- - rwxr-xr-x 17,556 lumpyexpress
- - rw-r--r-- 625 lumpyexpress.config
- - rwxr-xr-x 3,512 pairend_distro.py
- - rw-r--r-- 2,116 par-svtyper.sh
- - rwxr-xr-x 1,315 prob_bedpe_to_bedgraph.py
- - rwxr-xr-x 745 run_histo.sh
- - rwxr-xr-x 1,521 split_unmapped_to_fasta.pl
- - rwxr-xr-x 16,318 vcfToBedpe