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|
#!/bin/bash
if [ ! -d "../data/" ]
then
echo "../data/ directory does not exist"
echo "please download from http://layerlab.org/lumpy/data.tar.gz"
exit
fi
echo "Testing lumpy paired-end"
./bp_pe.sh 1 20 1e-3 150 \
../data/pe.pos_sorted.bam \
../data/sim.bedpe
echo "Testing lumpy split-read"
./bp_sr.sh 1 20 1e-3 150 \
../data/sr.pos_sorted.bam \
../data/sim.bedpe
echo "Testing lumpy paired-end and split-read"
./bp_pesr.sh 1 20 1e-3 150 \
../data/pe.pos_sorted.bam \
../data/sr.pos_sorted.bam \
../data/sim.bedpe
|
