File: lumpyexpress.config

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lumpy-sv 0.3.1%2Bdfsg-7
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LUMPY_HOME=/usr/share/lumpy-sv

LUMPY=/usr/bin/lumpy
HEXDUMP=/usr/bin/hexdump
SAMBLASTER=/usr/bin/samblaster
SAMBAMBA=/usr/bin/sambamba
SAMTOOLS=/usr/bin/samtools
PYTHON=/usr/bin/python3

PAIREND_DISTRO=/usr/share/lumpy-sv/scripts/pairend_distro.py
BAMGROUPREADS=/usr/share/bamkit/bamgroupreads.py
BAMFILTERRG=/usr/share/bamkit/bamfilterrg.py
BAMLIBS=/usr/share/bamkit/bamlibs.py